Thank you for letting me know sykoste, I’ll note this as what occured in your save for the team as well as what you tried to prompt it to unlock.
At the moment he only workaround that has worked for multiple players involves creating the trophies all on the starting island. However I understand this is not ideal for players and not possible for those who’ve already crafted trophies elsewhere.
ArmchairTuna66, who also plays on Xbox, mentioned above that they crafted theirs through the quickcraft menu and were able to unlock them, however I haven’t heard if this has been successful for other players.
If you still have a save from before crafting your most recent trophy, it worth trying to craft it through the quickcraft menu instead of the regular one to see if that makes a difference for you - please let me know if it does.
If the team have any updates or any other workarounds are found they will be posted in [Known Issue][PS4/XB1] "Call Me Ahab" Trophy not unlocking for players